Jacob
Vogan
Bio × AI. Building AI tools for life science research, including agentic systems for bioinformatics, structural biology, biomanufacturing, and automated labs. AI progress will ideally speed up the pace of research so people can live healthier, longer lives.
Shared repos include harnesses for long-running multi-agent work, molecular biology suite tools for researchers, and general-purpose AI agent skills.
Projects作品 · SELECTED REPOS
Motif
A molecular biology workbench for Claude Science. View maps and alignments, make entries and notes, and more — all without leaving Claude Science.
A Fable of Codexes
Claude Code skill for orchestrating Codex and Claude worker fleets with campaign state, worktrees, review gates, and resumable plans.
Small Molecules
Small-molecule design workflows: choose tools, plan synthesis, dock ligands, and check ADMET.
Structure Factory
AI-agent toolkit for structural biology: design binders, map structures, screen candidates, rank results, and prepare cloud-scale runs.
GeneCluster
Genome-mining workflows for natural products: search public genomes and transcriptomes, compare candidate clusters, and plan follow-up work.
BioProspector
Biosynthetic route exploration for target molecules: find enzyme and gene candidates and turn pathway ideas into follow-up searches and experiments.
CryoCore
Cryo-EM workflows for maps, models, figures, state comparison, and local or cloud compute preparation.
Ferm DoE
Fermentation and biomanufacturing experiment planning: choose design families, check scale context, and prepare run packets.
NeoCloud Bridge
Run agent workflows on cloud compute with preflight checks, cost caps, artifact receipts, and cleanup.
Proteus
Structural biology superpowers for AI coding agents: PyMOL, ChimeraX, AlphaFold DB, RCSB PDB, UniProt, and Rosetta workflows.
BioVoice
Talk to your protein structures. Voice control for PyMOL, ChimeraX, AlphaFold, and Rosetta on the OpenAI Realtime API.
Valar
Local speech stack for Apple Silicon: TTS, ASR, forced alignment, voices, daemon, and MCP bridge.
Telegram Codex Bridge
Local-first bridge: OpenAI Codex Desktop ↔ Telegram bot. Text, files, voice notes, and optional realtime calls.
Daneel
Skill that scaffolds a multi-model chatbot for Telegram or Discord. Claude, GPT, Gemini, and OpenAI-compatible backends. Only approved users can reach it, with prompt injection blocked by default.
Symphony Claude Lane
Portable skill for adding a Claude Code lane to OpenAI Symphony + Linear workflows.
Symphony Linear Starter
Self-improving starter skill / operator toolkit for Codex or Claude Code as orchestrator over Symphony workers + Linear.
yt-agent
AI Agent Tool for terminal-first YouTube search, download, catalog, and clip tooling on yt-dlp.
WhisperHUD
System-wide voice-to-text for macOS. Hold a hotkey, speak, text appears at your cursor. OpenAI / Gemini / Apple Speech / local — bring your own keys.